= Mascot Search=20 Results

User    =
        : Protea PRL
Email           : 
Search title    : PRL-S3
Database        : UniProtKB-SwissProt sprot_20070123 (254609 =
sequences; 93000223 residues)
Taxonomy        : Mammalia (mammals) (49274 sequences)
Timestamp       : 5 Mar 2008 at 17:53:35 GMT
Top Score       : 50 for P00004, =
Cytochrome c - Equus caballus (Horse)

Probability Based Mowse Score

Ions score is -10*Log(P), where P = is the=20 probability that the observed match is a random event.
Protein scores = greater=20 than 59 are significant (p<0.05).

=20

= =20 =20 = =20 =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 =20 =20 = =20 =20 =20 = =20 =20 =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 =20 = =20 = =20 = =20 = = =20 = = = = =20

=20

1.     P00004        = ;            =         Mass: 11939&n= bsp;   Score: 50     = Expect: 0.49  Queries=20 matched: 17

Cytochrome c - Equus caballus=20 (Horse)

       P68097        = ;            =         Mass: 11925&n= bsp;   Score: 37     = Expect: 11  Queries=20 matched: 15

Cytochrome c - Equus asinus=20 (Donkey)

       P68096        = ;            =         Mass: 11925&n= bsp;   Score: 37     = Expect: 11  Queries=20 matched: 15

Cytochrome c - Equus burchelli (Plains zebra) (Equus=20 quagga)

`2.`	`Q6PCT3 = ; = Mass: 24034&n= bsp; Score: 40 = Expect: 4.6 Queries=20 matched: 20`
	`Tumor protein D54 (Tumor protein D52-like 2) - Rattus = norvegicus (Rat)`

	`Q9CYZ2 = ; = Mass: 24085&n= bsp; Score: 35 = Expect: 17 Queries=20 matched: 19`
	`Tumor protein D54 (Tumor protein D52-like 2) - Mus = musculus=20 (Mouse)`

`3.`	`Q9D924 = ; = Mass: 14351&n= bsp; Score: 40 = Expect: 4.7 Queries=20 matched: 13`
	`HESB-like domain-containing protein 2, mitochondrial=20 precursor (Iron sulfur assembly protein IscA) =`

`4.`	`Q27996 = ; = Mass: 16374&n= bsp; Score: 39 = Expect: 5.9 Queries=20 matched: 13`
	`Lysozyme C, tracheal isozyme precursor (EC 3.2.1.17)=20 (1,4-beta-N-acetylmuramidase C) - Bos taurus = (`

`5.`	`Q5R7E0 = ; = Mass: 25119&n= bsp; Score: 38 = Expect: 8.4 Queries=20 matched: 15`
	`Peroxiredoxin-6 (EC 1.11.1.15) - Pongo pygmaeus=20 (Orangutan)`

`6.`	`Q8N283 = ; = Mass: 110811&= nbsp; Score: 37 Ex= pect: 10 Queries=20 matched: 38`
	`Ankyrin repeat domain-containing protein 35 - Homo = sapiens=20 (Human)`

`7.`	`Q9NZ50 = ; = Mass: 13245&n= bsp; Score: 37 = Expect: 10 Queries=20 matched: 11`
	`Gamma-synuclein (Synoretin) (SR) - Bos taurus=20 (Bovine)`

`8.`	`Q61598 = ; = Mass: 51018&n= bsp; Score: 36 = Expect: 12 Queries=20 matched: 25`
	`Rab GDP dissociation inhibitor beta (Rab GDI beta)=20 (Guanosine diphosphate dissociation inhibitor = 2)`

	`P50399 = ; = Mass: 51018&n= bsp; Score: 36 = Expect: 12 Queries=20 matched: 25`
	`Rab GDP dissociation inhibitor beta (Rab GDI beta)=20 (Guanosine diphosphate dissociation inhibitor = 2)`

`9.`	`P54921 = ; = Mass: 33627&n= bsp; Score: 34 = Expect: 18 Queries=20 matched: 18`
	`Alpha-soluble NSF attachment protein (SNAP-alpha)=20 (N-ethylmaleimide-sensitive factor attachment = pro`

`10.`	`P30041 = ; = Mass: 25133&n= bsp; Score: 34 = Expect: 20 Queries=20 matched: 15`
	`Peroxiredoxin-6 (EC 1.11.1.15) (Antioxidant protein = 2)=20 (1-Cys peroxiredoxin) (1-Cys PRX) (Acidic = ca`

`11.`	`Q3T9Z9 = ; = Mass: 66863&n= bsp; Score: 33 = Expect: 25 Queries=20 matched: 30`
	`Zinc finger protein C6orf113 homolog - Mus musculus=20 (Mouse)`

`12.`	`P27124 = ; = Mass: 51785&n= bsp; Score: 32 = Expect: 34 Queries=20 matched: 25`
	`FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl = cis-trans isomerase) (PPIase) (Rotamase) = (p59`

`13.`	`P69341 = ; = Mass: 6531&nb= sp; Score: 31 &= nbsp;Expect: 36 Queries=20 matched: 9`
	`Poly(A)-specific ribonuclease PARN (EC 3.1.13.4)=20 (Polyadenylate-specific ribonuclease)=20 (Deadenylati`

`14.`	`P48036 = ; = Mass: 35787&n= bsp; Score: 31 = Expect: 43 Queries=20 matched: 16`
	`Annexin A5 (Annexin V) (Lipocortin V) (Endonexin II)=20 (Calphobindin I) (CBP-I) (Placental = anticoagul`

`15.`	`P68083 = ; = Mass: 17072&n= bsp; Score: 30 = Expect: 48 Queries=20 matched: 13`
	`Myoglobin - Equus burchelli (Plains zebra) (Equus=20 quagga)`

	`P68082 = ; = Mass: 17072&n= bsp; Score: 30 = Expect: 48 Queries=20 matched: 13`
	`Myoglobin - Equus caballus = (Horse)`

`16.`	`Q62826 = ; = Mass: 74076&n= bsp; Score: 30 = Expect: 48 Queries=20 matched: 39`
	`Heterogeneous nuclear ribonucleoprotein M (hnRNP M) = (M4=20 protein) - Rattus norvegicus (Rat)`

`17.`	`O46563 = ; = Mass: 56272&n= bsp; Score: 30 = Expect: 48 Queries=20 matched: 27`
	`Vacuolar ATP synthase subunit H (EC 3.6.3.14) = (V-ATPase H=20 subunit) (Vacuolar proton pump subunit = H)`

`18.`	`Q9DB05 = ; = Mass: 33624&n= bsp; Score: 30 = Expect: 49 Queries=20 matched: 17`
	`Alpha-soluble NSF attachment protein (SNAP-alpha)=20 (N-ethylmaleimide-sensitive factor attachment = pro`

`19.`	`P07320 = ; = Mass: 21067&n= bsp; Score: 30 = Expect: 50 Queries=20 matched: 13`
	`Gamma crystallin D (Gamma crystallin 4) - Homo = sapiens=20 (Human)`

`20.`	`O70183 = ; = Mass: 28689&n= bsp; Score: 29 = Expect: 58 Queries=20 matched: 15`
	`Brain-derived neurotrophic factor precursor (BDNF) - = Cavia=20 porcellus (Guinea pig)`

Search Parameters

Type of search         : Peptide Mass =
Fingerprint
Enzyme                 : Trypsin
Fixed modifications    : Carbamidomethyl (C)
Variable modifications : Oxidation (M)
Mass values            : Monoisotopic
Protein Mass           : Unrestricted
Peptide Mass Tolerance : =B1 1 Da
Peptide Charge State   : 1+
Max Missed Cleavages   : 2
Number of queries      : 102

Mascot: http://www.matrixscience.com/ =

= Mascot Search=20 Results

Probability Based Mowse Score

Concise Protein Summary Report

Search Parameters

SERVICES

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about protea

`1.`	`P00004 = ; = Mass: 11939&n= bsp; Score: 50 = Expect: 0.49 Queries=20 matched: 17`
	`Cytochrome c - Equus caballus=20 (Horse)`

	`P68097 = ; = Mass: 11925&n= bsp; Score: 37 = Expect: 11 Queries=20 matched: 15`
	`Cytochrome c - Equus asinus=20 (Donkey)`

	`P68096 = ; = Mass: 11925&n= bsp; Score: 37 = Expect: 11 Queries=20 matched: 15`
	`Cytochrome c - Equus burchelli (Plains zebra) (Equus=20 quagga)`

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	Significance threshold p<	Max. number of hits